PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676781310
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 179aa    MW: 20439.6 Da    PI: 10.0413
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676781310genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00064769123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C+ C+++Fs+   L  H  +H
  676781310 47 FECKTCNRRFSSFQALGGHRASH 69
               89**********99999998887 PP

2zf-C2H216.52.4e-0594116123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++Cg+sF +   L  H+r+H
  676781310  94 HECSICGQSFGTGQALGGHMRRH 116
                78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.0E-124671IPR007087Zinc finger, C2H2
SuperFamilySSF576671.58E-746116No hitNo description
SMARTSM003550.164769IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.3464774IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
PfamPF139127.4E-1294118IPR007087Zinc finger, C2H2
SMARTSM003550.009794116IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.1894121IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MKRERSEFEE SIKNLDIARC LMILSQTSMV KQIDVDQYTD RNTSNRFECK TCNRRFSSFQ  60
ALGGHRASHK KPKLSVDQKE VKHFTNSYKG THMHECSICG QSFGTGQALG GHMRRHRSSI  120
TVEPSKLISP VIPTMPVLKR CSSSKRVLSL DLNLTPLEND LEIIFGKTFF PNIDMKFVV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410928.11e-119hypothetical protein EUTSA_v10017303mg
SwissprotQ9SLD41e-109ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLV4NZG81e-119V4NZG8_EUTSA; Uncharacterized protein
STRINGBra030981.1-P1e-111(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-110C2H2 family protein